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GenBank 2 Sequin - Prepare GenBank Files for Submission


GenBank 2 Sequin converts GenBank files into the NCBI submission format Sequin. Additionally, it provides a "five-column, tab-delimited feature table" and a FASTA file required for submission through BankIt or for the update of existing GenBank entires. The program was originally designed to prepare revised GeSeq output for NCBI submission. None the less, any GenBank file is accepted by GenBank 2 Sequin.

 

Please take a look at our Documentation and report bugs or suggestions for improvements by email.


 

Files

GenBank (required)

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Author Submission Template (optional)§

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Source Modifier Table (optional)&

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Gene Product Specification Table (optional)$

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Options

Specify your Sequence - NCBI Standard Parameters as Default

 

Definition

 

Organism

 

Molecule Type

 

Complete  Circular

 

 

Genetic Code

 

Location (e.g. Organelle)

 

Start Conversion Reset

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Result
 
 


§)"Author Submission Templates" can be created at NCBI. If no "Author Submission Templates" is provided GenBank 2 Sequin will use "Unknown Author" as default.

 

&)Please provide your "Source Modifier Table" in the source table format, saving a text file with the file extention src (*.src), or as two column, tab-delimited text file (*.txt). See NCBI for details on the controlled vocabulary allowed for source description. This is an optional upload. Sequence source information can also be added manually in Sequin.

 

$)Please upload your "Gene Product Specification Table" as a two column, tab-delimited text file (*.txt). If povided, GenBank 2 Seqin will search for the gene name of a given CDS, tRNA, or rRNA (first column), and add or edit its product description (second column) in your annotation. This feature is optional and might be used for the revision of larger genomes.