Login

GeSeq - Annotation of Organellar Genomes


GeSeq has been developed for a rapid and accurate annotation of organelle genomes, in particular chloroplast genomes.

 

Please take a look at our documentation which includes a quickstart section and do not hesitate to report bugs or suggestions for improvements by email.


Citations keep this server running. If you use GeSeq please cite:

 

Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R and Greiner S (2017) GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45: W6-W11


Hover over buttons for tips. To load an example job, press "Example" in the "Actions" field.


 

FASTA file(s) to annotate
Filelist

 

Sequence source

Options

   

Annotation

 

BLAT search

 

Protein search identity

Max intron length

bp

 

rRNA, tRNA, DNA search identity

Max intron length (except for self and shortmatches)

bp

 

HMMER profile search

3rd Party tRNA annotators

Genetic code

Max intron length

bp

Options

Additional command line parameters:

Search mode

Genetic code

Additional command line parameters:

Search mode

Genetic code

Max intron + V-loop length

bp

Cut-off score for reporting tRNAs

Additional command line parameters:

Sequence source

Search mode

Genetic Code

Cut-off score for reporting tRNAs

Score and report output options

Show primary and secondary structure components to scores

Additional command line parameters:

BLAT Reference Sequences

Server References

Add NCBI RefSeq(s)
no RefSeq selected

 

 

Custom References

GenBank

fileflist

FASTA Nucleotide (CDS)

fileflist

FASTA Nucleotide (tRNA, rRNA, primer, other DNA or RNA)

fileflist
Actions
 

Results 
joblist
 

Reset.url